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miRBase |
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Stem-loop sequence ssc-mir-140 |
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Accession | MI0002437 (change log) | ||||
Description | Sus scrofa miR-140 stem-loop | ||||
Gene family | MIPF0000085; mir-140 | ||||
Literature search |
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16 open access papers mention ssc-mir-140 | ||||
Stem-loop |
- a a uu uc 5' ccug cc gugguuuuacccu ugguagg acg a |||| || ||||||||||||| ||||||| ||| 3' ggac gg caccaagauggga accaucu ugu u a - c -- cg |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Database links |
Mature sequence ssc-miR-140-5p |
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Accession | MIMAT0002143 |
Previous IDs | ssc-miR-140 |
Sequence |
7 - agugguuuuacccuaugguag - 27 |
Deep sequencing | 2082 reads, 15 experiments |
Evidence | experimental; cloned [2], Illumina [3] |
Mature sequence ssc-miR-140-3p |
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Accession | MIMAT0006786 |
Previous IDs | ssc-miR-140* |
Sequence |
45 - uaccacaggguagaaccacggac - 67 |
Deep sequencing | 13829 reads, 15 experiments |
Evidence | experimental; cloned [2], Illumina [3-4] |
References |
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1 |
PMID:15885146
"Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing"
BMC Genomics. 6:70(2005).
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2 |
PMID:18548309
"Identification and characterization of new microRNAs from pig"
Mamm Genome. 19:570-580(2008).
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3 |
PMID:19917043
"MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
Anim Genet. 41:159-168(2010).
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4 |
PMID:24499489
"Exploration of microRNAs in porcine milk exosomes"
BMC Genomics. 15:100(2014).
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