Stem-loop sequence ssc-mir-23a

AccessionMI0002427 (change log)
DescriptionSus scrofa miR-23a stem-loop
Gene family MIPF0000027; mir-23
Literature search

29 open access papers mention ssc-mir-23a
(62 sentences)

   ---  gc     -       g    g      c  c 
5'    cg  ugggg uuccugg gaug gauuug ug c
      ||  ||||| ||||||| |||| |||||| || u
3'    gc  accuu agggacc uuac cuaaac ac g
   cca  ua     u       g    a      -  u 
Get sequence
Deep sequencing
14337 reads, 2.28e+03 reads per million, 15 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chr2: 65581838-65581907 [+]
Clustered miRNAs
< 10kb from ssc-mir-23a
ssc-mir-23achr2: 65581838-65581907 [+]
ssc-mir-27achr2: 65582015-65582096 [+]
ssc-mir-24-1chr2: 65582174-65582245 [+]
Database links

Mature sequence ssc-miR-23a

Accession MIMAT0002133

42 - 


 - 62

Get sequence
Deep sequencing14335 reads, 15 experiments
Evidence experimental; cloned [2,4], Illumina [3,5-6]


PMID:15885146 "Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing" Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L BMC Genomics. 6:70(2005).
PMID:18548309 "Identification and characterization of new microRNAs from pig" Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS Mamm Genome. 19:570-580(2008).
PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
PMID:20180025 "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue" Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS Mol Biol Rep. 37:3567-3574(2010).
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).