Stem-loop sequence ssc-mir-224

Accession

MI0002426 (change log)

Description

Sus scrofa miR-224 stem-loop

Gene family

MIPF0000088; mir-224

Literature search

7 open access papers mention ssc-mir-224
(13 sentences)

Stem-loop

          ca         u   u      a u   ag  u 
5' gggcuuu  agucacuag ggu ccguuu g aga  gu u
   |||||||  ||||||||| ||| |||||| | |||  || u
3' cccgaaa  ucagugauc ccg gguaaa c uuu  ua g
          ca         -   u      a -   gu  c 

Deep sequencing

11 reads, 0 reads per million, 7 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chrX: 140860060-140860140 [-]
• Overlapping transcripts:

  sense

  ENSSSCT00000013944 ; GABRE-201; intron 6

Clustered miRNAs

< 10kb from ssc-mir-224

• ssc-mir-452: chrX: 140861113-140861192 [-]
• ssc-mir-224: chrX: 140860060-140860140 [-]

Database links

• EntrezGene:MIR224
• miRBase Tracker:MI0002426

Mature sequence ssc-miR-224

• Accession: MIMAT0002132
• Sequence: 8 - caagucacuagugguuccguuua - 30
• Deep sequencing: 10 reads, 6 experiments
• Evidence: by similarity; MI0000301

References

1. PMID:15885146 "Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing" Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L BMC Genomics. 6:70(2005).