Stem-loop sequence ssc-mir-216-1

AccessionMI0002424 (change log)
Previous IDsssc-mir-216
DescriptionSus scrofa miR-216-1 stem-loop
Gene family MIPF0000054; mir-216
Literature search

4 open access papers mention ssc-mir-216-1
(6 sentences)

Stem-loop 
   ----------gaug   g  ag     u         cu   a      --a   -  u 
5'               gcu ug  uuggc uaaucucag  ggc acugug   gau gu c
                 ||| ||  ||||| |||||||||  ||| ||||||   ||| ||  
3'               cga ac  aaucg auuaggguc  cug ugacac   cua ca a
   ucccguuccuuuaa   g  -a     u         -u   g      ccc   a  u
Get sequence
Deep sequencing
15 reads, 0 reads per million, 5 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chr3: 90058975-90059079 [+]
intergenic
Clustered miRNAs
< 10kb from ssc-mir-216-1
ssc-mir-216-1chr3: 90058975-90059079 [+]
ssc-mir-217-1chr3: 90065707-90065813 [+]
Database links

Mature sequence ssc-miR-216

Accession MIMAT0002130
Sequence

19 -  

uaaucucagcuggcaacugugag

 - 41

Get sequence
Deep sequencing28 reads, 5 experiments
Evidence experimental; Illumina [1]

References

1
PMID:15885146 "Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing" Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L BMC Genomics. 6:70(2005).
2
PMID:19196471 "Cloning, characterization and expression analysis of porcine microRNAs" Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R BMC Genomics. 10:65(2009).
3
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).