Stem-loop sequence ssc-mir-135-1

Accession

MI0002415 (change log)

Previous IDs

ssc-mir-135a-1

Description

Sus scrofa miR-135-1 stem-loop

Gene family

MIPF0000028; mir-135

Literature search

3 open access papers mention ssc-mir-135-1
(11 sentences)

Stem-loop

   a g         u u          uu            uucua 
5'  g ccucgcugu c cuauggcuuu  auuccuauguga     c
    | ||||||||| | ||||||||||  ||||||||||||     u
3'  c ggggcggca g ggugccgagg  uagggauauacu     g
   a a         c c          -u            uacuc 

Deep sequencing

139 reads, 7.14 reads per million, 14 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr13: 37564051-37564140 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR135-1
• miRBase Tracker:MI0002415

Mature sequence ssc-miR-135

• Accession: MIMAT0002121
• Previous IDs: ssc-miR-135a-1
• Sequence: 17 - uauggcuuuuuauuccuauguga - 39
• Deep sequencing: 213 reads, 14 experiments
• Evidence: experimental; Illumina [2]

References

1. PMID:15885146 "Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing" Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L BMC Genomics. 6:70(2005).
2. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).