Stem-loop sequence ssc-mir-105-2

AccessionMI0002411 (change log)
DescriptionSus scrofa miR-105-2 stem-loop
Gene family MIPF0000074; mir-105
Literature search

1 open access papers mention ssc-mir-105-2
(1 sentences)

Stem-loop 
   ugu         u  a          -   uug    c   u 
5'    gcaucgugg ca augcucagac ucc   gugg ugc u
      ||||||||| || |||||||||| |||   |||| |||  
3'    ugugguauc gu uacgaguuug agg   cacc acg a
   auc         -  g          u   ---    -   u
Get sequence
Deep sequencing
2 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chrX: 141093619-141093698 [-]
sense
Clustered miRNAs
< 10kb from ssc-mir-105-2
ssc-mir-105-2chrX: 141093619-141093698 [-]
ssc-mir-105-1chrX: 141091501-141091581 [-]
Database links

Mature sequence ssc-miR-105-2

Accession MIMAT0002117
Sequence

13 -  

ucaaaugcucagacuccuug

 - 32

Get sequence
Deep sequencing1 reads, 1 experiments
Evidence by similarity; MI0000112

References

1
PMID:15885146 "Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing" Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L BMC Genomics. 6:70(2005).