Stem-loop ptc-MIR399h

Accession

MI0002345

Description

Populus trichocarpa ptc-MIR399h precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention ptc-MIR399h
(9 sentences)

Sequence

aaaccaguugcagggcaccucucuuccuuggcagacaguacuaauggugccuauagcuucaagcugagaggguaugcgagaaucuugaucccaauauaggcuUGCCAAAGGAGAGUUUCCCUGugaccguuu
((((..(((((((((...(((((((..(((((((...(((((...)))))((.(((((...))))))).(((.((.((((...))))))))).........))))))))))))))...))))))))).))))

Structure

    ca         cac       cc       acaguacuaauggugccuauagcuucaagcugaga   u  g    a 
aaac  guugcaggg   cucucuu  uuggcag                                   ggg au cgag  
||||  |||||||||   |||||||  |||||||                                   ||| || |||| a
uuug  caguGUCCC   GAGAGGA  AACCGUu                                   ccc ua guuc  
    -c         UUU       --       --------------------------cggauauaa   -  -    u 

Annotation confidence Not enough data

Genome context

CM000348.2: 13760890-13761021 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR399h

Mature ptc-miR399h

• Accession: MIMAT0002051
• Description: Populus trichocarpa ptc-miR399h mature miRNA
• Sequence: 103 - UGCCAAAGGAGAGUUUCCCUG - 123
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604