Stem-loop ptc-MIR399a

Accession

MI0002338

Description

Populus trichocarpa ptc-MIR399a precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention ptc-MIR399a
(10 sentences)

Sequence

gcaauaauuaccgggcaauuacucuuuuggcagcuggccacucaacggcggcaggugaucaaauucaccaaugcaaacaaguaagcucgcUGCCAAAGGAGAUUUGCCCCGcaauucauc
.....((((.(.((((((.(.(((((((((((((.(((.(((.....(((...(((((......)))))..))).....)))..))).)))))))))))))).)))))).).))))....

Structure

gcaau    a c      u a             u   -c   caacg   gca     uc 
     aauu c gggcaa u cucuuuuggcagc ggc  acu     gcg   gguga  a
     |||| | |||||| | ||||||||||||| |||  |||     |||   |||||   
     uuaa G CCCGUU A GAGGAAACCGUcg ucg  uga     cgu   ccacu  a
-cuac    c C      U -             c   aa   acaaa   -aa     ua 

Annotation confidence Not enough data

Genome context

CM000340.2: 4598194-4598313 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR399a

Mature ptc-miR399a

• Accession: MIMAT0002044
• Description: Populus trichocarpa ptc-miR399a mature miRNA
• Sequence: 91 - UGCCAAAGGAGAUUUGCCCCG - 111
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604