Stem-loop ptc-MIR398b

Accession

MI0002336

Description

Populus trichocarpa ptc-MIR398b precursor miRNA

Gene family

MIPF0000107; MIR398

Literature search

4 open access papers mention ptc-MIR398b
(13 sentences)

Sequence

aggguuccgacaggagcggccuuggcucacauguggcggcauccaauguacuucaUGUGUUCUCAGGUCGCCCCUGccgggcuuc
.((((.(((.((((.(((((((.((..((((((.((..((((...)))).)).))))))..)).))))))).)))).))))))).

Structure

a    u   a    a       u  cu      u  cg    c 
 gggu ccg cagg gcggccu gg  cacaug gg  gcau  
 |||| ||| |||| ||||||| ||  |||||| ||  |||| c
 uucg ggc GUCC CGCUGGA UC  GUGUac uc  ugua  
c    -   c    C       C  UU      u  -a    a 

Annotation confidence Not enough data

Genome context

CM000337.2: 26837928-26838012 [-]

Mature ptc-miR398b

• Accession: MIMAT0002042
• Description: Populus trichocarpa ptc-miR398b mature miRNA
• Sequence: 56 - UGUGUUCUCAGGUCGCCCCUG - 76
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604