Stem-loop ptc-MIR395b

Accession

MI0002316

Description

Populus trichocarpa ptc-MIR395b precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

6 open access papers mention ptc-MIR395b
(8 sentences)

Sequence

guguccccuagaguucccuugagcacuucacugggacccuucagaccgaaagaguauuaucuuucccaCUGAAGUGUUUGGGGGAACUCcugguguca
.((.(.((..((((((((((((((((((((.(((((.............((((......))))))))).))))))))))))))))))))..)).).))

Structure

g  u c  ua                    c     cccuucagaccga    gu 
 ug c cc  gaguucccuugagcacuuca uggga             aaga  a
 || | ||  |||||||||||||||||||| |||||             ||||   
 ac g gg  CUCAAGGGGGUUUGUGAAGU acccu             uucu  u
-  u u  uc                    C     -------------    au 

Annotation confidence Not enough data

Genome context

CM000342.2: 7424410-7424507 [+]

Mature ptc-miR395b

• Accession: MIMAT0002022
• Description: Populus trichocarpa ptc-miR395b mature miRNA
• Sequence: 69 - CUGAAGUGUUUGGGGGAACUC - 89
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604