Stem-loop ptc-MIR319g

Accession

MI0002302

Description

Populus trichocarpa ptc-MIR319g precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

8 open access papers mention ptc-MIR319g
(30 sentences)

Sequence

uaaucgugggagagagcuucuuucagcccacucguggauaggacaaagggguugaacuagcugccgacucauucauucaagcacuaguagaaaaaaaggcgaacgguguuucuuuugcuacugugauugugugaaugaugcgggagauaauuuuccauccucuccuuuucugugcUUGGACUGAAGGGAGCUCCUuccuucucu
.......(((((.(((((((((((((.(((..((((((.((((....(((((.(((.((.((.(((..((((((((.(((.(((.((((((((((((.((.....)).))).)))).)))))))).))).))))))))..))).)).))...))).))))).))))..))))))..))).))))))))))))))))))......

Structure

uaaucgu     a             c   cu      -u    caaa     u   --c  g  g   ac        u   g   u     -    -   g  g 
       gggag gagcuucuuucag cca  cgugga  agga    ggggu gaa   ua cu ccg  ucauucau caa cac aguag aaaa aaa gc a
       ||||| ||||||||||||| |||  ||||||  ||||    ||||| |||   || || |||  |||||||| ||| ||| ||||| |||| ||| || a
       ccuUC CUCGAGGGAAGUC GGU  gugucu  uccu    uccua cuu   au ga ggc  aguaagug guu gug ucauc uuuu uuu ug c
-ucucuu     -             A   Uc      uu    ---c     c   uua  a  g   gu        u   a   -     g    c   g  g 

Annotation confidence Not enough data

Genome context

CM000355.2: 10665338-10665541 [+]

Mature ptc-miR319g

• Accession: MIMAT0002008
• Description: Populus trichocarpa ptc-miR319g mature miRNA
• Sequence: 176 - UUGGACUGAAGGGAGCUCCU - 195
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203