Stem-loop ptc-MIR171c

Accession

MI0002279

Description

Populus trichocarpa ptc-MIR171c precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

6 open access papers mention ptc-MIR171c
(11 sentences)

Sequence

aaaagaaagcgauguuggugagguucaauccgaagacggauuuacacgugaaaguaauuguaaaauacgaucucAGAUUGAGCCGCGCCAAUAUCacuuucuca
...((((((.((((((((((.(((((((((.((.((((..((((((.((.......))))))))...)).)))).))))))))).)))))))))).))))))..

Structure

aaa      c          a         c  a  -  -ga      c  ga 
   agaaag gauguuggug gguucaauc ga ga cg   uuuaca gu  a
   |||||| |||||||||| ||||||||| || || ||   |||||| ||  a
   ucuuuc CUAUAACCGC CCGAGUUAG cu cu gc   aaaugu ua  g
-ac      a          G         A  -  a  aua      -  au 

Annotation confidence Not enough data

Genome context

CM000342.2: 4686630-4686733 [-]

Mature ptc-miR171c

• Accession: MIMAT0001985
• Description: Populus trichocarpa ptc-miR171c mature miRNA
• Sequence: 75 - AGAUUGAGCCGCGCCAAUAUC - 95
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203