Stem-loop ptc-MIR169z

Accession

MI0002276

Description

Populus trichocarpa ptc-MIR169z precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

9 open access papers mention ptc-MIR169z
(12 sentences)

Sequence

uaguagaaugCAGCCAAGAAUGAUUUGCCGGcgccggccagcacuuguugcaaagcaacuaagcaagggcuucaaauguuuuuggcaccccggcaaguuguucuuggcuacauuugga
.....(((((.((((((((((((((((((((.(((((((....((((((((...))))).)))....))))............)))...)))))))))))))))))))).)))))...

Structure

uagua     C                    --c   ------------    agca   -     a 
     gaaug AGCCAAGAAUGAUUUGCCGG   gcc            ggcc    cuu guugc  
     ||||| ||||||||||||||||||||   |||            ||||    ||| ||||| a
     uuuac ucgguucuuguugaacggcc   cgg            ucgg    gaa caacg  
--agg     a                    cca   uuuuuguaaacu    gaac   u     a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR169z

• Accession: MIMAT0001982
• Description: Populus trichocarpa ptc-miR169z mature miRNA
• Sequence: 11 - CAGCCAAGAAUGAUUUGCCGG - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604