Stem-loop ptc-MIR169s

Accession

MI0002269

Description

Populus trichocarpa ptc-MIR169s precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

9 open access papers mention ptc-MIR169s
(12 sentences)

Sequence

agagugugauUCAGCCAAGGAUGACUUGCCGgcagcagguaagagcaaagcuccguuuuuggaaguucaaggauaucuuaacuuuuccggccggcaagcuguccuuggcuacauuguacu
..((((((((..(((((((((((.(((((((((.........((((...))))......((((((((.(((.....)))))))..))))))))))))).)))))))))))..))))))))

Structure

ag        UC           A         agcagguaagagcaaagcuccguuuu    --    c   g 
  agugugau  AGCCAAGGAUG CUUGCCGgc                          ugga  aguu aag a
  ||||||||  ||||||||||| |||||||||                          ||||  |||| ||| u
  ucauguua  ucgguuccugu gaacggccg                          gccu  ucaa uuc a
--        ca           c         --------------------------    uu    -   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR169s

• Accession: MIMAT0001975
• Description: Populus trichocarpa ptc-miR169s mature miRNA
• Sequence: 11 - UCAGCCAAGGAUGACUUGCCG - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604