Stem-loop ptc-MIR169aa

Accession

MI0002246

Description

Populus trichocarpa ptc-MIR169aa precursor miRNA

Gene family

MIPF0000253; MIR169_3

Literature search

9 open access papers mention ptc-MIR169aa
(12 sentences)

Sequence

guagagaucGAGCCAAGAAUGACUUGUCGGcaggcuagcaauugcuacguauagagcaauauguaugcuagaaugaguauuccgccaggucguucuuggcucaacuuug
.(((((...(((((((((((((((((.(((((..((((((((((((.(.....))))))).....))))))..))......))).)))))))))))))))))..)))))

Structure

g     auc                 U   ------  gg      -----      a g 
 uagag   GAGCCAAGAAUGACUUG CGG      ca  cuagca     auugcu c u
 |||||   ||||||||||||||||| |||      ||  ||||||     |||||| | a
 guuuc   cucgguucuugcuggac gcc      gu  gaucgu     uaacga g u
-     -aa                 c   uuauga  aa      augua      - a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR169aa

• Accession: MIMAT0001952
• Description: Populus trichocarpa ptc-miR169aa mature miRNA
• Sequence: 10 - GAGCCAAGAAUGACUUGUCGG - 30
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604