Stem-loop ptc-MIR169a

Accession

MI0002245

Description

Populus trichocarpa ptc-MIR169a precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

9 open access papers mention ptc-MIR169a
(14 sentences)

Sequence

aagugguaugCAGCCAAGGAUGACUUGCCGAcuuaacugaucuguauaaauuaaugcauguguagucaaaauuacuacuacuauauauuaaucugaucugugaccacaaauuaacuaacuacuagcuaguaauuaguuggcaaguuguccauggcuacaugcugc
..((((((((.(((((.((((((((((((((((..((((..((((((......))))).)..))))...(((((((((((.((..(((((((.((...........)).))))).))..)).))).)))))))))))))))))))))))).))))).))))))))

Structure

aa        C     A                uaacugaucuguauaaauuaaugcauguguagucaa        -   c  ua  -     c  aucu 
  gugguaug AGCCA GGAUGACUUGCCGAcu                                    aauuacua cua ua  ua uuaau ug    g
  |||||||| ||||| ||||||||||||||||                                    |||||||| ||| ||  || ||||| ||    u
  cgucguac ucggu ccuguugaacgguuga                                    uuaaugau gau au  au aauua ac    g
--        a     a                ------------------------------------        c   c  ca  c     a  acca 

Annotation confidence Not enough data

Genome context

CM000337.2: 3089790-3089954 [-]

Mature ptc-miR169a

• Accession: MIMAT0001951
• Description: Populus trichocarpa ptc-miR169a mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGA - 31
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604