Stem-loop ptc-MIR168b

Accession

MI0002244

Description

Populus trichocarpa ptc-MIR168b precursor miRNA

Gene family

MIPF0000081; MIR168

Literature search

5 open access papers mention ptc-MIR168b
(11 sentences)

Sequence

ggucucuaauUCGCUUGGUGCAGGUCGGGAAcugauucggcgauuugauugccagauggcuaaacacgauuggcugugaggcaaauuauaaaaagaaagagaauuggauCCCGCCUUGCAUCAACUGAAUcggaga
..(((((.(((((.((((((((((.(((((.(((((((..(....((((((((..((((((((......))))))))..))).)))))......).....))))))).))))).)))))))))).))))).)))))

Structure

gg     a     C          U     A       ---gg --gauu     -   ag        ac 
  ucucu auUCG UUGGUGCAGG CGGGA cugauuc     c      ugauu gcc  auggcuaa  a
  ||||| ||||| |||||||||| ||||| |||||||     |      ||||| |||  ||||||||   
  agagg UAAGU AACUACGUUC GCCCu gguuaag     g      auuaa cgg  ugucgguu  c
--     c     C          C     a       agaaa aaaaau     a   ag        ag 

Annotation confidence Not enough data

Genome context

CM000340.2: 22942209-22942344 [-]

Mature ptc-miR168b-5p

• Accession: MIMAT0001950
• Description: Populus trichocarpa ptc-miR168b-5p mature miRNA
• Sequence: 11 - UCGCUUGGUGCAGGUCGGGAA - 31
• Evidence: experimental ; cloned [1], miRNAseq [5]

Mature ptc-miR168b-3p

• Accession: MIMAT0022897
• Description: Populus trichocarpa ptc-miR168b-3p mature miRNA
• Sequence: 110 - CCCGCCUUGCAUCAACUGAAU - 130
• Evidence: experimental ; miRNAseq [5]

References

1. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


3. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


4. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203


5. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034