Stem-loop ptc-MIR156f

Accession

MI0002189

Description

Populus trichocarpa ptc-MIR156f precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

8 open access papers mention ptc-MIR156f
(77 sentences)

Sequence

agagaaagacUGACAGAAGAGAGUGAGCACacacgaaagcuaauuguaugaaagcauaccauugcagggugugugcucacuucucuucugucagcuuacau
.....(((.(((((((((((((((((((((((((....((.(((.(((((....))))).)))))...)))))))))))).))))))))))))))))....

Structure

agaga   a             -            gaaa  u   u     a 
     aag cUGACAGAAGAGA GUGAGCACacac    gc aau guaug a
     ||| ||||||||||||| ||||||||||||    || ||| |||||  
     uuc gacugucuucucu cacucgugugug    cg uua cauac a
-uaca   -             u            -gga  -   c     g 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR156f

• Accession: MIMAT0001895
• Description: Populus trichocarpa ptc-miR156f mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604