Stem-loop ptc-MIR156c

Accession

MI0002186

Description

Populus trichocarpa ptc-MIR156c precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

9 open access papers mention ptc-MIR156c
(79 sentences)

Sequence

cauuagaaacUGACAGAAGAGAGUGAGCACacagaggcauauuuguauaaaucuauaccauugcuuuugcgugcucacuucucauucugucagcuuccag
.....(((.(((((((((((((((((((((.((((((((.....(((((....)))))...)))))))).)))))))).)))).))))))))).)))...

Structure

cauua   a         -    -        a        uauuu     a 
     gaa cUGACAGAA GAGA GUGAGCAC cagaggca     guaua a
     ||| ||||||||| |||| |||||||| ||||||||     |||||  
     cuu gacugucuu cucu cacucgug guuuucgu     cauau u
--gac   c         a    u        c        --uac     c 

Annotation confidence Not enough data

Genome context

CM000342.2: 25766668-25766767 [+]

Mature ptc-miR156c

• Accession: MIMAT0001892
• Description: Populus trichocarpa ptc-miR156c mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604