Stem-loop sequence dre-mir-219-3

Accession

MI0002054 (change log)

Description

Danio rerio miR-219-3 stem-loop

Gene family

MIPF0000044; mir-219

Literature search

7 open access papers mention dre-mir-219-3
(23 sentences)

Stem-loop

      cu   uuaa        gucu   u   uacuga   u    u  -    u     aa            gcuu 
5' cuu  cuu    guucaucu    ggu uga      cgg cagg gc ugau gucca  cgcaauucuugu    g
   |||  |||    ||||||||    ||| |||      ||| |||| || |||| |||||  ||||||||||||    u
3' gaa  gaa    cggguagg    cua acu      guc gucc cg acua caggu  guguugaggaca    g
      au   ---c        acau   c   --ccug   u    u  c    -     ag            aagu 

Deep sequencing

11705 reads, 483 reads per million, 6 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr19: 18861739-18861888 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir219-3
• EntrezGene:mir219-3
• RNAcentral:URS000075ECD5_7955
• miRBase Tracker:MI0002054

Mature sequence dre-miR-219-5p

• Accession: MIMAT0001286
• Previous IDs: dre-miR-219
• Sequence: 49 - ugauuguccaaacgcaauucuu - 70
• Deep sequencing: 890 reads, 5 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075A3A0_7955
• Predicted targets:
  • TargetScanFish:dre-miR-219

Mature sequence dre-miR-219-3p

• Accession: MIMAT0031989
• Sequence: 87 - ggaguuguggauggacaucacgc - 109
• Deep sequencing: 11405 reads, 5 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00007721F1_7955

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).