Stem-loop sequence dre-mir-193a-1

Accession

MI0002029 (change log)

Description

Danio rerio miR-193a-1 stem-loop

Gene family

MIPF0000082; mir-193

Literature search

3 open access papers mention dre-mir-193a-1
(7 sentences)

Stem-loop

   gacauua   u      gg     u     cg   a  g    u   ua 
5'        aug guuaga  uuggg cuuug  ggc ag ugag agu  a
          ||| ||||||  ||||| |||||  ||| || |||| |||  a
3'        uac cggucu  gaccc gaaac  ccg uc acuc uca  u
   -cuauug   u      uu     u     au   g  a    -   uu 

Deep sequencing

180 reads, 9.09 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr3: 35959912-35960010 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-193a-1

• dre-mir-193a-1: chr3: 35959912-35960010 [+]
• dre-mir-365-2: chr3: 35960989-35961086 [+]

Database links

• EntrezGene:mir193a-1
• EntrezGene:mir193a-1
• RNAcentral:URS000075D711_7955
• miRBase Tracker:MI0002029

Mature sequence dre-miR-193a-5p

• Accession: MIMAT0031981
• Sequence: 21 - ugggucuuugcgggcaagguga - 42
• Deep sequencing: 222 reads, 10 experiments
• Evidence: not experimental

Mature sequence dre-miR-193a-3p

• Accession: MIMAT0001856
• Previous IDs: dre-miR-193a
• Sequence: 61 - aacuggccuacaaagucccagu - 82
• Deep sequencing: 134 reads, 7 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00005DBAF3_7955
• Predicted targets:
  • TargetScanFish:dre-miR-193a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).