Stem-loop dre-mir-190a

Accession

MI0002027

Description

Danio rerio dre-mir-190a precursor miRNA

Gene family

MIPF0000076; mir-190

Literature search

3 open access papers mention dre-mir-190a
(5 sentences)

Sequence

200 reads, 21 reads per million, 10 experiments

ucuggaggugagguagaccuggaagccuuucugcaggccucuguuUGAUAUGUUUGAUAUAUUAGGUuguuauucuguccaacuauauaucaaacauauuccuacaguguccugcucugucuccag
.(((((((.(((((..........))))).).(((((.(.((((..((((((((((((((((..(((((..........)))))))))))))))))))))...)))).).))))).....))))))

Structure

u      gugagguagaccuggaagccuuucu     c u    -uU                UA     uuau 
 cuggag                         gcagg c cugu   GAUAUGUUUGAUAUAU  GGUug    u
 ||||||                         ||||| | ||||   ||||||||||||||||  |||||     
 gaccuc                         cgucc g gaca   uuauacaaacuauaua  ucaac    c
-      --------------------ugucu     u u    ucc                --     cugu 

Annotation confidence Not enough data

Genome context

chr25: 33139075-33139200 [+]

Mature dre-miR-190a

• Accession: MIMAT0001854
• Description: Danio rerio dre-miR-190a mature miRNA
• Sequence: 46 - UGAUAUGUUUGAUAUAUUAGGU - 67
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293