Stem-loop sequence dre-mir-153a

Accession

MI0002021 (change log)

Description

Danio rerio miR-153a stem-loop

Gene family

MIPF0000050; mir-153

Literature search

5 open access papers mention dre-mir-153a
(146 sentences)

Stem-loop

       g      -             gu       -a   a 
5' gguu ccagug ucauuuuugugau  ugcagcu  guu u
   |||| |||||| |||||||||||||  |||||||  ||| a
3' ucaa gguuac agugaaaacacug  acguuga  cga u
       a      u             au       cc   g 

Deep sequencing

5875 reads, 145 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr7: 40485510-40485590 [+]	sense OTTDART00000025249 ; ptprn2-001; intron 19 ENSDART00000052222 ; ptprn2-001; intron 19 ENSDART00000099049 ; ptprn2-201; intron 19
KZ115240.1: 286869-286949 [+]	sense OTTDART00000025249 ; ptprn2-001; intron 19 ENSDART00000052222 ; ptprn2-001; intron 19 ENSDART00000099049 ; ptprn2-201; intron 19

Database links

• EntrezGene:mir153a
• EntrezGene:mir153a
• RNAcentral:URS0000759A2E_7955
• miRBase Tracker:MI0002021

Mature sequence dre-miR-153a-5p

• Accession: MIMAT0031978
• Sequence: 11 - gucauuuuugugauguugcagcu - 33
• Deep sequencing: 729 reads, 5 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000075DD05_7955

Mature sequence dre-miR-153a-3p

• Accession: MIMAT0001849
• Previous IDs: dre-miR-153a
• Sequence: 50 - uugcauagucacaaaagugauc - 71
• Deep sequencing: 5056 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000068B85_7955
• Predicted targets:
  • TargetScanFish:dre-miR-153a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).