Stem-loop sequence dre-mir-150

Accession

MI0002016 (change log)

Description

Danio rerio miR-150 stem-loop

Gene family

MIPF0000197; mir-150

Literature search

6 open access papers mention dre-mir-150
(89 sentences)

Stem-loop

   ca    c           u      a        ugauu 
5'   ucuc gucucucccaa ccuugu ccaguguc     u
     |||| ||||||||||| |||||| ||||||||      
3'   ggag cgggggggguu ggggca ggucgcag     a
   ag    u           u      -        uagac 

Deep sequencing

1206 reads, 18.2 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr3: 32571309-32571387 [+]	antisense OTTDART00000053538 ; si:ch73-367p23.6-001; exon 3 ENSDART00000151755 ; si:ch73-367p23.6-001; exon 3
KZ115072.1: 58270-58348 [+]	antisense OTTDART00000053538 ; si:ch73-367p23.6-001; exon 3 ENSDART00000151755 ; si:ch73-367p23.6-001; exon 3

Database links

• EntrezGene:mir150
• EntrezGene:mir150
• RNAcentral:URS000075ADBC_7955
• miRBase Tracker:MI0002016

Mature sequence dre-miR-150

• Accession: MIMAT0001846
• Sequence: 11 - ucucccaauccuuguaccagug - 32
• Deep sequencing: 1166 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075E14D_7955
• Predicted targets:
  • TargetScanFish:dre-miR-150

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).