Stem-loop sequence dre-mir-145

Accession

MI0002010 (change log)

Previous IDs

dre-mir-145-1

Description

Danio rerio miR-145 stem-loop

Gene family

MIPF0000079; mir-145

Literature search

10 open access papers mention dre-mir-145
(186 sentences)

Stem-loop

        cu  aucauuu     u        uc    u  c             ggg a 
5' ucagu  uc       ccuca ccccgggg  cagu uu ccaggaaucccuu   c a
   |||||  ||       ||||| ||||||||  |||| || |||||||||||||   |  
3' aguca  ag       ggggu gggguucu  guca aa gguccuuaggggg   g u
        uc  ----guc     u        -u    u  a             aaa c 

Deep sequencing

4280 reads, 464 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr14: 38743941-38744053 [+]	intergenic
KZ115462.1: 19335-19447 [+]	intergenic

Clustered miRNAs

< 10kb from dre-mir-145

• dre-mir-143: chr14: 38742313-38742411 [+]
• dre-mir-145: chr14: 38743941-38744053 [+]

Database links

• EntrezGene:mir145
• RNAcentral:URS000075DF2C_7955
• miRBase Tracker:MI0002010

Mature sequence dre-miR-145-5p

• Accession: MIMAT0001842
• Previous IDs: dre-miR-145
• Sequence: 30 - guccaguuuucccaggaauccc - 51
• Deep sequencing: 2870 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000047FE55_7955
• Predicted targets:
  • TargetScanFish:dre-miR-145

Mature sequence dre-miR-145-3p

• Accession: MIMAT0031976
• Sequence: 69 - ggauuccuggaaauacuguucu - 90
• Deep sequencing: 1394 reads, 11 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000052F380_7955

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).