Stem-loop dre-mir-144

Accession

MI0002009

Description

Danio rerio dre-mir-144 precursor miRNA

Gene family

MIPF0000093; mir-144

Literature search

5 open access papers mention dre-mir-144
(17 sentences)

Sequence

1752 reads, 140 reads per million, 9 experiments

gcucucuagacaGGAUAUCAUCGUAUACUGUAAGUucauuauugagacacUACAGUAUAGAUGAUGUACUauccagggggucaacgagc
(((((((.((.((.((((((((.(((((((((..((((....))))....))))))))))))))))).)).)).)))))))........

Structure

--------       a  c  G        G         --AG    u 
        gcucucu ga aG AUAUCAUC UAUACUGUA    Uuca u
        ||||||| || || |||||||| |||||||||    ||||  
        uggggga cu UC UGUAGUAG AUAUGACAU    gagu a
cgagcaac       c  a  A        -         caca    u 

Annotation confidence High

Genome context

chr5: 42272074-42272162 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-144

Mature dre-miR-144-3p

• Accession: MIMAT0001841
• Description: Danio rerio dre-miR-144-3p mature miRNA
• Sequence: 51 - UACAGUAUAGAUGAUGUACU - 70
• Evidence: experimental ; cloned [1]

Mature dre-miR-144-5p

• Accession: MIMAT0031975
• Description: Danio rerio dre-miR-144-5p mature miRNA
• Sequence: 13 - GGAUAUCAUCGUAUACUGUAAGU - 35
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293