Stem-loop dre-mir-142b

Accession

MI0002006

Description

Danio rerio dre-mir-142b precursor miRNA

Gene family

MIPF0000084; mir-142

Literature search

7 open access papers mention dre-mir-142b
(42 sentences)

Sequence

2015 reads, 259 reads per million, 10 experiments

acagugcagucacuCAUAAAGUAGACAGCACUACUAaacuucucuacacaguguaguguuuccuacuuuauggaugaguguacugu
((((((((.(((.(((((((((((..((((((((..................))))))))..))))))))))).))).))))))))

Structure

        g   c           AC        UAaacuuc 
acagugca uca uCAUAAAGUAG  AGCACUAC        u
|||||||| ||| |||||||||||  ||||||||         
ugucaugu agu gguauuucauc  uugugaug        c
        g   a           cu        ugacacau 

Annotation confidence High

Genome context

chr15: 15383898-15383983 [-]

Mature dre-miR-142b-5p

• Accession: MIMAT0001839
• Description: Danio rerio dre-miR-142b-5p mature miRNA
• Sequence: 15 - CAUAAAGUAGACAGCACUACUA - 36
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293