Stem-loop sequence dre-mir-135c-1

Accession

MI0001996 (change log)

Previous IDs

dre-mir-135-1

Description

Danio rerio miR-135c-1 stem-loop

Gene family

MIPF0000028; mir-135

Literature search

5 open access papers mention dre-mir-135c-1
(12 sentences)

Stem-loop

   ug     uu u        cuau           uuucu 
5'   cugug  u auggcuuu    uccuaugugau     u
     |||||  | ||||||||    |||||||||||     c
3'   gacau  g uaccgaaa    gggauacacug     u
   ga     gg u        -cuu           ugccg 

Deep sequencing

302 reads, 12.5 reads per million, 8 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr11: 38175071-38175150 [-]	intergenic
KZ115363.1: 400023-400102 [-]	intergenic

Database links

• EntrezGene:mir135c-1
• EntrezGene:mir135c-1
• RNAcentral:URS000075C8E3_7955
• miRBase Tracker:MI0001996

Mature sequence dre-miR-135c

• Accession: MIMAT0001833
• Previous IDs: dre-miR-135
• Sequence: 11 - uauggcuuucuauuccuaugug - 32
• Deep sequencing: 574 reads, 8 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075DE6E_7955
• Predicted targets:
  • TargetScanFish:dre-miR-135c

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).