Stem-loop sequence dre-mir-133b

Accession

MI0001994 (change log)

Description

Danio rerio miR-133b stem-loop

Gene family

MIPF0000029; mir-133

Literature search

27 open access papers mention dre-mir-133b
(357 sentences)

Stem-loop

       ccu   u         ca  u  a     gu ag  gu 
5' cacg   ugc guggcuggu  aa gg accaa  c  gu  u
   ||||   ||| |||||||||  || || |||||  |  ||   
3' gugc   gcg caucgacca  uu cc ugguu  g  cg  u
       --u   u         ac  c  c     ug ag  uc 

Deep sequencing

17122 reads, 409 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr20: 19543379-19543462 [-]
• Overlapping transcripts:

  sense

  OTTDART00000058152 ; si:ch211-101l18.8-001; exon 2

  ENSDART00000152763 ; si:ch211-101l18.8-001; exon 2

Clustered miRNAs

< 10kb from dre-mir-133b

• dre-mir-206-1: chr20: 19544648-19544746 [-]
• dre-mir-133b: chr20: 19543379-19543462 [-]

Database links

• EntrezGene:mir133b
• EntrezGene:mir133b
• RNAcentral:URS000075A55E_7955
• miRBase Tracker:MI0001994

Mature sequence dre-miR-133b-5p

• Accession: MIMAT0003405
• Previous IDs: dre-miR-133b*
• Sequence: 15 - gcuggucaaauggaaccaaguc - 36
• Deep sequencing: 3396 reads, 5 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075D85F_7955

Mature sequence dre-miR-133b-3p

• Accession: MIMAT0001831
• Previous IDs: dre-miR-133b
• Sequence: 53 - uuugguccccuucaaccagcua - 74
• Deep sequencing: 13666 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000032BD73_7955
• Predicted targets:
  • TargetScanFish:dre-miR-133b

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).