Stem-loop sequence dre-mir-130c-2

Accession

MI0001988 (change log)

Description

Danio rerio miR-130c-2 stem-loop

Gene family

MIPF0000034; mir-130

Literature search

5 open access papers mention dre-mir-130c-2
(12 sentences)

Stem-loop

   u    ga    g        uc      acu     g  gu 
5'  uguu  ccag gcccuuuu  uguugu   acugu ca  c
    ||||  |||| ||||||||  ||||||   ||||| ||   
3'  acag  gguu cgggaaaa  auaacg   ugacg gu  a
   a    uc    a        uu      ---     a  ag 

Deep sequencing

40629 reads, 1.33e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr5: 13288828-13288908 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-130c-2

• dre-mir-130c-2: chr5: 13288828-13288908 [+]
• dre-mir-301b: chr5: 13289353-13289433 [+]
• dre-mir-454b: chr5: 13296307-13296422 [+]

Database links

• EntrezGene:mir130c-2
• EntrezGene:mir130c-2
• RNAcentral:URS000075B026_7955
• miRBase Tracker:MI0001988

Mature sequence dre-miR-130c-5p

• Accession: MIMAT0031969
• Sequence: 13 - gcccuuuuucuguuguacuacu - 34
• Deep sequencing: 573 reads, 9 experiments
• Evidence: not experimental

Mature sequence dre-miR-130c-3p

• Accession: MIMAT0001828
• Previous IDs: dre-miR-130c
• Sequence: 50 - cagugcaauauuaaaagggcau - 71
• Deep sequencing: 80600 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00004D1582_7955
• Predicted targets:
  • TargetScanFish:dre-miR-130c

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).