Stem-loop dre-mir-130b

Accession

MI0001986

Description

Danio rerio dre-mir-130b precursor miRNA

Gene family

MIPF0000034; mir-130

Literature search

6 open access papers mention dre-mir-130b
(9 sentences)

Sequence

24809 reads, 936 reads per million, 11 experiments

cuguugccugacacucuuucccuguugcacuacugugggagcugcagcaaagCAGUGCAAUAAUGAAAGGGCAUcaguccacug
..((.(.((((..(((((((..(((((((((.((((((...))))))......)))))))))..)))))))..)))).).))..

Structure

cu  u c    ca       cc         -----a      g 
  gu g cuga  cucuuuc  uguugcacu      cugugg  
  || | ||||  |||||||  |||||||||      |||||| a
  ca c gacU  GGGAAAG  AUAACGUGA      gacguc  
gu  c u    AC       UA         Cgaaac      g 

Annotation confidence High

Genome context

chr5: 13299331-13299414 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-130b

Mature dre-miR-130b

• Accession: MIMAT0001827
• Description: Danio rerio dre-miR-130b mature miRNA
• Sequence: 53 - CAGUGCAAUAAUGAAAGGGCAU - 74
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293