Stem-loop dre-mir-124-5

Accession

MI0001970

Description

Danio rerio dre-mir-124-5 precursor miRNA

Gene family

MIPF0000021; mir-124

Literature search

23 open access papers mention dre-mir-124-5
(79 sentences)

Sequence

7206 reads, 504 reads per million, 7 experiments

ggguuuugcucgugcguucuuuuugaguucucgcucugCGUGUUCACAGCGGACCUUGAUuuaauguccauacaauUAAGGCACGCGGUGAAUGCCAAgagaagaaucucuccagcaacgaguuugcgc
(.((...((((((((.........(((((((..((((..((((((((.(((..((((((((............))))))))..))).))))))))..)))).)))).)))....)).))))))..)).)

Structure

 g  uuu      -  guucuuuuu   -    cg    gC        A   GA        uaaug 
g gu   gcucgu gc         gag uucu  cucu  GUGUUCAC GCG  CCUUGAUu     u
| ||   |||||| ||         ||| ||||  ||||  |||||||| |||  ||||||||      
c cg   ugagca cg         cuc aaga  gagA  CGUAAGUG CGC  GGAAUuaa     c
 g  -uu      a  -----accu   u    -a    AC        G   AC        cauac 

Annotation confidence High

Genome context

chr23: 17783413-17783541 [+]

Mature dre-miR-124-3p

• Accession: MIMAT0001819
• Description: Danio rerio dre-miR-124-3p mature miRNA
• Sequence: 77 - UAAGGCACGCGGUGAAUGCCAA - 98
• Evidence: experimental ; cloned [1]

Mature dre-miR-124-5p

• Accession: MIMAT0031960
• Description: Danio rerio dre-miR-124-5p mature miRNA
• Sequence: 39 - CGUGUUCACAGCGGACCUUGAU - 60
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293