Stem-loop sequence dre-mir-26b

Accession

MI0001927 (change log)

Description

Danio rerio miR-26b stem-loop

Gene family

MIPF0000043; mir-26

Literature search

6 open access papers mention dre-mir-26b
(11 sentences)

Stem-loop

     auu       ug     uu         c         -----    u 
5' gc   uggccuu  ccugg  caaguaauc aggauaggu     uagu c
   ||   |||||||  |||||  ||||||||| |||||||||     ||||  
3' cg   aucggag  ggacu  guucauugg ucuuauccg     auca c
     agc       ga     uu         u         gcaug    c 

Deep sequencing

273108 reads, 3.17e+04 reads per million, 12 experiments

Confidence

Annotation confidence: high

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Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr23: 24675207-24675303 [-]	sense OTTDART00000028068 ; ctdsp2-001; intron 4 OTTDART00000028070 ; ctdsp2-003; intron 4 ENSDART00000104035 ; ctdsp2-001; intron 4 ENSDART00000137313 ; ctdsp2-003; intron 4
KZ115688.1: 295804-295900 [-]	sense OTTDART00000028068 ; ctdsp2-001; intron 4 OTTDART00000028070 ; ctdsp2-003; intron 4 ENSDART00000104035 ; ctdsp2-001; intron 4 ENSDART00000137313 ; ctdsp2-003; intron 4

Database links

• EntrezGene:mir26b
• EntrezGene:mir26b
• RNAcentral:URS000075A3DB_7955
• miRBase Tracker:MI0001927

Mature sequence dre-miR-26b

• Accession: MIMAT0001795
• Sequence: 20 - uucaaguaauccaggauagguu - 41
• Deep sequencing: 273056 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075C49C_7955
• Predicted targets:
  • TargetScanFish:dre-miR-26b

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).