Stem-loop sequence dre-mir-24-4

Accession

MI0001918 (change log)

Description

Danio rerio miR-24-4 stem-loop

Gene family

MIPF0000041; mir-24

Literature search

6 open access papers mention dre-mir-24-4
(79 sentences)

Stem-loop

          gu  c       g      a      ua       guu 
5' gagggcu  uc cacuugu ccugcu aacugg  ucaguau   g
   |||||||  || ||||||| |||||| ||||||  |||||||   a
3' cuccuga  ag guggaca ggacga uugacu  ggucgug   u
          --  u       a      c      -c       auu 

Deep sequencing

21425 reads, 1.12e+03 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr22: 5307485-5307574 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-24-4

• dre-mir-27e: chr22: 5299951-5300056 [+]
• dre-mir-24-4: chr22: 5307485-5307574 [+]

Database links

• EntrezGene:mirn24-4
• RNAcentral:URS000075B6FA_7955
• miRBase Tracker:MI0001918

Mature sequence dre-miR-24

• Accession: MIMAT0001792
• Sequence: 56 - uggcucaguucagcaggaacag - 77
• Deep sequencing: 85524 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000059273E_7955
• Predicted targets:
  • TargetScanFish:dre-miR-24

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).