Stem-loop dre-mir-23b

Accession

MI0001917

Description

Danio rerio dre-mir-23b precursor miRNA

Gene family

MIPF0000027; mir-23

Literature search

12 open access papers mention dre-mir-23b
(58 sentences)

Sequence

6537 reads, 858 reads per million, 11 experiments

guggcuguguggguucuuggcaugcugauuugugacuguaguaaaaaaaaAUCACAUUGCCAGGGAUUACCAcacuaccac
((((..((((((((((((((((((.((((((.................)))))))).))))))))))..))))))..))))

Structure

    cu      --          -  c      gugacug 
gugg  gugugg  guucuuggca ug ugauuu       u
||||  ||||||  |||||||||| || ||||||       a
cacc  cacACC  UAGGGACCGU AC ACUAaa       g
    au      AU          U  -      aaaaaau 

Annotation confidence Not enough data

Genome context

chr10: 15954579-15954659 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-23b

Mature dre-miR-23b

• Accession: MIMAT0001791
• Description: Danio rerio dre-miR-23b mature miRNA
• Sequence: 51 - AUCACAUUGCCAGGGAUUACCA - 72
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293