Stem-loop sequence dre-mir-23a-3

Accession

MI0001916 (change log)

Previous IDs

dre-mir-23a-4

Description

Danio rerio miR-23a-3 stem-loop

Gene family

MIPF0000027; mir-23

Literature search

11 open access papers mention dre-mir-23a-3
(208 sentences)

Stem-loop

   c       --a gg           a       -gg     
5'  cagcugg   g  auuccuggcag gugauuu   gauu 
    |||||||   |  ||||||||||| |||||||   ||| a
3'  gucgacc   c  uagggaccguu cacuaaa   cuau 
   u       aac uu           a       aua     

Deep sequencing

30803 reads, 3.75e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr2: 33900435-33900512 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-23a-3

• dre-mir-23a-3: chr2: 33900435-33900512 [+]
• dre-mir-27a: chr2: 33902325-33902455 [+]
• dre-mir-24b: chr2: 33905762-33905845 [+]

Database links

• EntrezGene:mir23a-3
• EntrezGene:mir23a-3
• RNAcentral:URS000075E7B8_7955
• miRBase Tracker:MI0001916

Mature sequence dre-miR-23a-3-5p

• Accession: MIMAT0031945
• Sequence: 11 - ggauuccuggcagagugauuu - 31
• Deep sequencing: 1097 reads, 10 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00007638A9_7955

Mature sequence dre-miR-23a-3p

• Accession: MIMAT0001790
• Previous IDs: dre-miR-23a
• Sequence: 48 - aucacauugccagggauuucca - 69
• Deep sequencing: 95168 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000391DB6_7955
• Predicted targets:
  • TargetScanFish:dre-miR-23a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).