Stem-loop dre-mir-23a-2

Accession

MI0001915

Description

Danio rerio dre-mir-23a-2 precursor miRNA

Gene family

MIPF0000027; mir-23

Literature search

11 open access papers mention dre-mir-23a-2
(212 sentences)

Sequence

17132 reads, 2783 reads per million, 11 experiments

cucuucugccggccagggGAAUUCCUGGCAGAGUGAUUUuuaaaccuaaugacugaAUCACAUUGCCAGGGAUUUCCAauggcucgugugacucagag
((((((.((((((((.(((((((((((((((.(((((((...............))))))).)))))))))))))))..)))).)).))))...))))

Structure

    ---  u  -  -    -g               A       uuaaac 
cucu   uc gc cg gcca  ggGAAUUCCUGGCAG GUGAUUU      c
||||   || || || ||||  ||||||||||||||| |||||||      u
gaga   ag ug gc cggu  CCUUUAGGGACCGUU CACUAag      a
    cuc  -  u  u    aA               A       ucagua 

Annotation confidence High

Genome context

chr3: 13406226-13406323 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-23a-2

Mature dre-miR-23a-3p

• Accession: MIMAT0001790
• Description: Danio rerio dre-miR-23a-3p mature miRNA
• Sequence: 57 - AUCACAUUGCCAGGGAUUUCCA - 78
• Evidence: experimental ; cloned [1]

Mature dre-miR-23a-5p

• Accession: MIMAT0031944
• Description: Danio rerio dre-miR-23a-5p mature miRNA
• Sequence: 19 - GAAUUCCUGGCAGAGUGAUUU - 39
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293