Stem-loop dre-mir-9-4

Accession

MI0001882

Description

Danio rerio dre-mir-9-4 precursor miRNA

Gene family

MIPF0000014; mir-9

Literature search

22 open access papers mention dre-mir-9-4
(213 sentences)

Sequence

31034 reads, 1225 reads per million, 11 experiments

uggguuaguuuuucUCUUUGGUUAUCUAGCUGUAUGAguuuaugugauaucaUAAAGCUAGAGAACCGAAUGUAuaaacuaauucca
.((((((((((.....(((((((.(((((((.(((((..((....))..))))).))))))).))))))).....))))))))))..

Structure

-u          uucUC       A       G     gu  a 
  ggguuaguuu     UUUGGUU UCUAGCU UAUGA  uu u
  ||||||||||     ||||||| ||||||| |||||  ||  
  cuuaaucaaa     AAGCCAA AGAUCGA AUacu  ag g
ac          uAUGU       G       A     au  u 

Annotation confidence High

Genome context

chr22: 18254769-18254855 [+]

Mature dre-miR-9-5p

• Accession: MIMAT0001769
• Description: Danio rerio dre-miR-9-5p mature miRNA
• Sequence: 15 - UCUUUGGUUAUCUAGCUGUAUGA - 37
• Evidence: experimental ; cloned [1]

Mature dre-miR-9-4-3p

• Accession: MIMAT0031932
• Description: Danio rerio dre-miR-9-4-3p mature miRNA
• Sequence: 53 - UAAAGCUAGAGAACCGAAUGUA - 74
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293