Stem-loop dre-mir-7a-3

Accession

MI0001879

Description

Danio rerio dre-mir-7a-3 precursor miRNA

Gene family

MIPF0000022; mir-7

Literature search

13 open access papers mention dre-mir-7a-3
(103 sentences)

Sequence

518 reads, 60 reads per million, 11 experiments

uguguguguguucugcccucugcggagUGGAAGACUAGUGAUUUUGUUGUgaaaaugaacaaaaaccaacaacaaaccgcagucguccucucagcacggggcccacaccugcagagcaca
......(((((((((((((((((.(((.(((.((((.(((..((((((((..................)))))))).))))))).))).))).))).)))).........))))))))))

Structure

ugugug          ---------    -   g   U   A    A   AU        gaaaauga 
      uguguucugc         ccuc ugc gag GGA GACU GUG  UUUGUUGU        a
      ||||||||||         |||| ||| ||| ||| |||| |||  ||||||||         
      acacgagacg         gggg acg cuc ccu cuga cgc  aaacaaca        c
------          uccacaccc    c   a   u   g    -   -c        accaaaaa 

Annotation confidence Not enough data

Genome context

chr8: 10205-10324 [+]

Mature dre-miR-7a

• Accession: MIMAT0001266
• Description: Danio rerio dre-miR-7a mature miRNA
• Sequence: 28 - UGGAAGACUAGUGAUUUUGUUGU - 50
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293