miRBase entry: dre-let-7h

Stem-loop dre-let-7h


Accession
MI0001875
Description
Danio rerio dre-let-7h precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
39 open access papers mention dre-let-7h
(201 sentences)

Sequence

5897 reads, 446 reads per million, 11 experiments
gaguuggcuguguuguggUGAGGUAGUAAGUUGUGUUGUUguuggggaucaguauaguauggcccuugaaggagauaacuauacaauuuacugccuuccauaaugcagacucuc
((((...(((((((((((.(((((((((((((((((.((((((((((.(((........))))))).......)))))).))))))))))))))))))))))))))))))))..

Structure
--    ugg           U                 U      -------    a   gua 
  gagu   cuguguugugg GAGGUAGUAAGUUGUGU GUUguu       gggg uca   u
  ||||   ||||||||||| ||||||||||||||||| ||||||       |||| |||    
  cuca   gacguaauacc uuccgucauuuaacaua caauag       uccc ggu   a
cu    ---           -                 u      aggaagu    -   aug 


Annotation confidence Not enough data
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Genome context
chr23: 28536665-28536778 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-let-7h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-let-7h

Accession MIMAT0001766
Description Danio rerio dre-let-7h mature miRNA
Sequence 19 - UGAGGUAGUAAGUUGUGUUGUU - 40
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293