miRBase entry: dre-let-7g-2

Stem-loop dre-let-7g-2


Accession
MI0001874
Description
Danio rerio dre-let-7g-2 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
39 open access papers mention dre-let-7g-2
(216 sentences)

Sequence

11780 reads, 725 reads per million, 11 experiments
guggacugugggaUGAGGUAGUAGUUUGUAUAGUUuuaggaucacaccagaucugggagauaacuauacagucuacugucuuucccacgguuaccgc
(((((((((((((.((((((((((.((((((((((...(((((......))))).......)))))))))).)))))))))))))))))))..))))

Structure
    --         U          U          ----uua     ac 
gugg  acuguggga GAGGUAGUAG UUGUAUAGUU       ggauc  a
||||  ||||||||| |||||||||| ||||||||||       |||||   
cgcc  uggcacccu uucugucauc gacauaucaa       ucuag  c
    au         -          u          uagaggg     ac 


Annotation confidence Not enough data
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Genome context
chr23: 28536361-28536457 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-let-7g-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-let-7g

Accession MIMAT0001765
Description Danio rerio dre-let-7g mature miRNA
Sequence 14 - UGAGGUAGUAGUUUGUAUAGUU - 35
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293