miRBase entry: dre-let-7f

Stem-loop dre-let-7f


Accession
MI0001872
Description
Danio rerio dre-let-7f precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
39 open access papers mention dre-let-7f
(205 sentences)

Sequence

17280 reads, 1337 reads per million, 10 experiments
ugguaaugcuugugcagugUGAGGUAGUAGAUUGUAUAGUUguaggguagugauuuuauccuguguagaagauaacuauacaaucuauugccuucccugaggggcagaaauacaca
......(((((.(.(((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).))))).)))))..........

Structure
----ugguaa     g g   u U                       ---------       u 
          ugcuu u cag g GAGGUAGUAGAUUGUAUAGUUgu         aggguag g
          ||||| | ||| | |||||||||||||||||||||||         ||||||| a
          acggg a guc c uuccguuaucuaacauaucaaua         uccuauu u
acacauaaag     g -   - c                       gaagaugug       u 


Annotation confidence Not enough data
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Genome context
chr11: 27503017-27503132 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-let-7f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-let-7f

Accession MIMAT0001764
Description Danio rerio dre-let-7f mature miRNA
Sequence 20 - UGAGGUAGUAGAUUGUAUAGUU - 41
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293