miRBase entry: dre-let-7e

Stem-loop dre-let-7e


Accession
MI0001871
Description
Danio rerio dre-let-7e precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
42 open access papers mention dre-let-7e
(209 sentences)

Sequence

30532 reads, 2136 reads per million, 11 experiments
gcuguucuuggggcUGAGGUAGUAGAUUGAAUAGUUguggagcccugcgcucucucucugagauaacuauacaaucuacugucuuuccuaaggcgacagc
(((((((((((((..((((((((((((((.(((((((((((((.....)))))(((...))))))))))).)))))))))))))))))))))..))))))

Structure
      --       cU              A        ---------     c 
gcuguu  cuugggg  GAGGUAGUAGAUUG AUAGUUgu         ggagc c
||||||  |||||||  |||||||||||||| ||||||||         ||||| u
cgacag  gaauccu  uucugucaucuaac uaucaaua         ucucg g
      cg       --              a        gagucucuc     c 


Annotation confidence Not enough data
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Genome context
chr23: 5431418-5431517 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-let-7e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-let-7e

Accession MIMAT0001763
Description Danio rerio dre-let-7e mature miRNA
Sequence 15 - UGAGGUAGUAGAUUGAAUAGUU - 36
Evidence

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293