miRBase entry: dre-let-7d-2

Stem-loop dre-let-7d-2


Accession
MI0001870
Description
Danio rerio dre-let-7d-2 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
42 open access papers mention dre-let-7d-2
(305 sentences)

Sequence

5588 reads, 485 reads per million, 11 experiments
cgcugcaggcUGAGGUAGUUGGUUGUAUGGUUuugcaucauaaucagccuggaguuaaCUGUACAACCUUCUAGCUUUCCcugcggug
(((((((((..(((.(((..((((((((((((..((.(((.........))).)).))))))))))))..))).)))..)))))))))

Structure
         cU   G   UU            uu  a   uaa 
cgcugcagg  GAG UAG  GGUUGUAUGGUU  gc uca   u
|||||||||  ||| |||  ||||||||||||  || |||   c
guggcgucC  UUC AUC  CCAACAUGUCaa  ug ggu   a
         CU   G   UU            -u  a   ccg 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr19: 9429857-9429944 [+]

Database links

Mature dre-let-7d-5p

Accession MIMAT0001762
Description Danio rerio dre-let-7d-5p mature miRNA
Sequence 11 - UGAGGUAGUUGGUUGUAUGGUU - 32
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-let-7d-3p

Accession MIMAT0031931
Description Danio rerio dre-let-7d-3p mature miRNA
Sequence 59 - CUGUACAACCUUCUAGCUUUCC - 80
Evidence not_experimental

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293