miRBase entry: dre-let-7d-1

Stem-loop dre-let-7d-1


Accession
MI0001868
Description
Danio rerio dre-let-7d-1 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
42 open access papers mention dre-let-7d-1
(301 sentences)

Sequence

5587 reads, 484 reads per million, 11 experiments
ugugcguugcggugUGAGGUAGUUGGUUGUAUGGUUuugcauaauaaacagcccggaguuaaCUGUACAACCUUCUAGCUUUCCcugcggcugcacg
.(((((((((((.(.(((.(((..((((((((((((..((.................)).))))))))))))..))).))).).))))))).)))).

Structure
u    -       u U   G   UU            uu  auaauaa 
 gugc guugcgg g GAG UAG  GGUUGUAUGGUU  gc       a
 |||| ||||||| | ||| |||  ||||||||||||  ||       c
 cacg cggcguc C UUC AUC  CCAACAUGUCaa  ug       a
g    u       C U   G   UU            -u  aggcccg 


Annotation confidence High
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Genome context
chr16: 24881122-24881218 [+]

Database links

Mature dre-let-7d-5p

Accession MIMAT0001762
Description Danio rerio dre-let-7d-5p mature miRNA
Sequence 15 - UGAGGUAGUUGGUUGUAUGGUU - 36
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-let-7d-3p

Accession MIMAT0031931
Description Danio rerio dre-let-7d-3p mature miRNA
Sequence 63 - CUGUACAACCUUCUAGCUUUCC - 84
Evidence not_experimental

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293