miRBase entry: dre-let-7c-1

Stem-loop dre-let-7c-1


Accession
MI0001866
Description
Danio rerio dre-let-7c-1 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
40 open access papers mention dre-let-7c-1
(217 sentences)

Sequence

11840 reads, 912 reads per million, 11 experiments
cugagagugugugcauccaggcUGAGGUAGUAGGUUGUAUGGUUuagaauuuugcccugggaguuaaCUGUACAACCUUCUAGCUUUCCuuggagcucacaagccag
(((.(..((((.((.((((((..(((.(((.(((((((((((((...((((((......))))))))))))))))))).))).)))..)))))))).))))..))))

Structure
   a ag    u  a      cU   G   U             uag      gc 
cug g  ugug gc uccagg  GAG UAG AGGUUGUAUGGUU   aauuuu  c
||| |  |||| || ||||||  ||| ||| |||||||||||||   ||||||   
gac c  acac cg agguuC  UUC AUC UCCAACAUGUCaa   uugagg  c
   - ga    u  -      CU   G   U             ---      gu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr15: 29795823-29795929 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-let-7c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-let-7c-5p

Accession MIMAT0001761
Description Danio rerio dre-let-7c-5p mature miRNA
Sequence 23 - UGAGGUAGUAGGUUGUAUGGUU - 44
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-let-7c-3p

Accession MIMAT0031930
Description Danio rerio dre-let-7c-3p mature miRNA
Sequence 68 - CUGUACAACCUUCUAGCUUUCC - 89
Evidence not_experimental

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293