miRBase entry: dre-let-7a-6

Stem-loop dre-let-7a-6


Accession
MI0001863
Description
Danio rerio dre-let-7a-6 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
43 open access papers mention dre-let-7a-6
(334 sentences)

Sequence

195940 reads, 13902 reads per million, 11 experiments
cacagugaaccuguguguuucuucaaggUGAGGUAGUAGGUUGUAUAGUUugugggaaggaucacauccuauucaggugauaacuauacagucuauugccuucccugagagacacaaugaccacgagug
(((.(((......((((((((((..(((.((((((((((((((((((((((.((((.(((((...))))).)))).)....))))))))))))))))))))).))))))))))))).....)))..)))

Structure
   -a   aaccug          ca   U                     ---- g    a     c 
cac  gug      uguguuucuu  agg GAGGUAGUAGGUUGUAUAGUU    u uggg aggau  
|||  |||      ||||||||||  ||| |||||||||||||||||||||    | |||| ||||| a
gug  cac      acacagagag  ucc uuccguuaucugacauaucaa    g acuu uccua  
   ag   -cagua          --   c                     uagu g    a     c 


Annotation confidence High
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Genome context
chr6: 54506458-54506586 [-]

Database links

Mature dre-let-7a

Accession MIMAT0001759
Description Danio rerio dre-let-7a mature miRNA
Sequence 29 - UGAGGUAGUAGGUUGUAUAGUU - 50
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293