miRBase entry: dre-let-7a-4

Stem-loop dre-let-7a-4


Accession
MI0001861
Description
Danio rerio dre-let-7a-4 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
43 open access papers mention dre-let-7a-4
(334 sentences)

Sequence

194949 reads, 13778 reads per million, 11 experiments
gcgaugucucgggaUGAGGUAGUAGGUUGUAUAGUUuagaguuacaacacgggagauaacuguacagccuccuagcuuuccucgagcagacgc
(((.((.(((((((.(((.(((.(((((((((((((.....................))))))))))))).))).)))))).))))))..)))

Structure
   -a  u    -   U   G   U             uagaguuac 
gcg  ug cucg gga GAG UAG AGGUUGUAUAGUU         a
|||  || |||| ||| ||| ||| |||||||||||||         a
cgc  ac gagc ccu uuc auc uccgacaugucaa         c
   ag  -    u   -   g   c             uagagggca 


Annotation confidence Not enough data
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Genome context
chr5: 29990452-29990544 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-let-7a-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-let-7a

Accession MIMAT0001759
Description Danio rerio dre-let-7a mature miRNA
Sequence 15 - UGAGGUAGUAGGUUGUAUAGUU - 36
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293