miRBase entry: dre-let-7a-3

Stem-loop dre-let-7a-3


Accession
MI0001860
Description
Danio rerio dre-let-7a-3 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
43 open access papers mention dre-let-7a-3
(334 sentences)

Sequence

196104 reads, 13908 reads per million, 11 experiments
gagacugucguuuggggUGAGGUAGUAGGUUGUAUAGUUugaggguuuaacccuugcugucagauaacuauacaacuuacugucuuucccgaaguggccguaguguc
((.((((((((((.(((.((((((((((((((((((((((((((((...))))))).........))))))))))))))))))))).))).)))))))...))).))

Structure
  g   ---       g   U                     ---------       u 
ga acu   gucguuu ggg GAGGUAGUAGGUUGUAUAGUU         ugagggu  
|| |||   ||||||| ||| |||||||||||||||||||||         ||||||| u
cu uga   cggugaa ccc uucugucauucaacauaucaa         guuccca  
  g   ugc       g   u                     uagacuguc       a 


Annotation confidence High
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Genome context
chr4: 18654155-18654261 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-let-7a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-let-7a

Accession MIMAT0001759
Description Danio rerio dre-let-7a mature miRNA
Sequence 18 - UGAGGUAGUAGGUUGUAUAGUU - 39
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293