miRBase entry: dre-let-7a-2

Stem-loop dre-let-7a-2


Accession
MI0001858
Description
Danio rerio dre-let-7a-2 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
43 open access papers mention dre-let-7a-2
(334 sentences)

Sequence

194988 reads, 13783 reads per million, 11 experiments
gcccccaggcUGAGGUAGUAGGUUGUAUAGUUuagaauaacaucacuggagauaacuguacaaccuccuagcuuucccugagau
.....((((..(((.(((.(((((((((((((.........(((......)))))))))))))))).))).)))..))))....

Structure
gcccc    cU   G   U             uagaauaac   ac 
     cagg  GAG UAG AGGUUGUAUAGUU         auc  u
     ||||  ||| ||| |||||||||||||         |||   
     gucc  uuc auc uccaacaugucaa         uag  g
-uaga    cu   g   c             ---------   ag 


Annotation confidence Not enough data
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Genome context
chr15: 21437876-21437959 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-let-7a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-let-7a

Accession MIMAT0001759
Description Danio rerio dre-let-7a mature miRNA
Sequence 11 - UGAGGUAGUAGGUUGUAUAGUU - 32
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293